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igfn1.4 immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 4 [ Danio rerio (zebrafish) ]

Gene ID: 100331815, updated on 9-Dec-2024

Summary

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Official Symbol
igfn1.4provided by ZNC
Official Full Name
immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 4provided by ZNC
Primary source
ZFIN:ZDB-GENE-131125-85
See related
Ensembl:ENSDARG00000086028 AllianceGenome:ZFIN:ZDB-GENE-131125-85
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:zfos-489f5.2
Summary
Predicted to be involved in sarcomere organization. Predicted to be active in M band. Orthologous to human IGFN1 (immunoglobulin like and fibronectin type III domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See igfn1.4 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (46772687..46785448, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (46771005..46783566, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene zgc:66479 Neighboring gene immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 2 Neighboring gene uncharacterized LOC137496012 Neighboring gene uncharacterized LOC137496011 Neighboring gene immunoglobulin-like and fibronectin type III domain-containing protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Hypoxia-inducible factor 3 is an oxygen-dependent transcription activator and regulates a distinct transcriptional response to hypoxia. Zhang P, et al. Cell Rep, 2014 Mar 27. PMID 24613356
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
immunoglobulin-like and fibronectin type III domain-containing protein 1
Names
zmp:0000000879

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    46772687..46785448 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_068221827.1 → XP_068077928.1  immunoglobulin-like and fibronectin type III domain-containing protein 1

    Related
    ENSDARP00000129103.1, ENSDART00000156037.2
Nucleotide Protein
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