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si:ch73-330k17.3 si:ch73-330k17.3 [ Danio rerio (zebrafish) ]

Gene ID: 100330439, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch73-330k17.3provided by ZNC
Official Full Name
si:ch73-330k17.3provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-190
See related
Ensembl:ENSDARG00000097169 AllianceGenome:ZFIN:ZDB-GENE-131121-190
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable insulin-like growth factor binding activity. Predicted to be involved in regulation of signal transduction. Predicted to act upstream of or within regulation of cell growth. Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch73-330k17.3 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (31890252..31898219, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (31479304..31487601, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene secretory carrier membrane protein 5a Neighboring gene poly (ADP-ribose) polymerase family, member 16 Neighboring gene eukaryotic translation initiation factor 3, subunit Ja Neighboring gene amyloid beta (A4) precursor protein-binding, family A, member 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables insulin-like growth factor binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of cell growth IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
IGFBP domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001386661.1 → NP_001373590.1  IGFBP domain-containing protein precursor

    Status: VALIDATED

    Source sequence(s)
    CU694372
    UniProtKB/TrEMBL
    A0A8M1REH8, X1WGX6
    Related
    ENSDARP00000129485.1, ENSDART00000156128.2
    Conserved Domains (1) summary
    pfam00219
    Location:29 → 85
    IGFBP; Insulin-like growth factor binding protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    31890252..31898219 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials