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LOC100330257 ras-related protein Rab-39A [ Danio rerio (zebrafish) ]

Gene ID: 100330257, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100330257
Gene description
ras-related protein Rab-39A
See related
Ensembl:ENSDARG00000102580
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC100330257 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 17 NC_007128.7 (5623901..5629531)
105 previous assembly GRCz10 (GCF_000002035.5) 17 NC_007128.6 (5466539..5472555)

Chromosome 17 - NC_007128.7Genomic Context describing neighboring genes Neighboring gene ectonucleotide pyrophosphatase/phosphodiesterase 4 Neighboring gene family with sequence similarity 167 member Aa Neighboring gene uncharacterized LOC137488064 Neighboring gene XK, Kell blood group complex subunit-related family, member 6a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ras-related protein Rab-39A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007128.7 Reference GRCz11 Primary Assembly

    Range
    5623901..5629531
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002665125.7 → XP_002665171.1  ras-related protein Rab-39A

    UniProtKB/TrEMBL
    A0A8M9Q631, E7F060
    Related
    ENSDARP00000130389.1, ENSDART00000171220.2
    Conserved Domains (1) summary
    cl21455
    Location:7 → 211
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394973.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    105351..110981
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021473050.2 → XP_021328725.1  ras-related protein Rab-39A

    UniProtKB/TrEMBL
    A0A8M9Q631, E7F060
    Conserved Domains (1) summary
    cl21455
    Location:7 → 211
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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