U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

si:ch73-167f10.1 si:ch73-167f10.1 [ Danio rerio (zebrafish) ]

Gene ID: 100329648, updated on 12-Sep-2024

Summary

Go to the top of the page Help
Official Symbol
si:ch73-167f10.1provided by ZNC
Official Full Name
si:ch73-167f10.1provided by ZNC
Primary source
ZFIN:ZDB-GENE-131121-334
See related
Ensembl:ENSDARG00000102946 AllianceGenome:ZFIN:ZDB-GENE-131121-334
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See si:ch73-167f10.1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (49379258..49383100, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (45233851..45236855, complement)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490149 Neighboring gene uncharacterized LOC137490150 Neighboring gene uncharacterized LOC137490774 Neighboring gene trans-2,3-enoyl-CoA reductase a Neighboring gene sterile alpha motif domain containing 1a

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170125.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CU207408

  2. NR_170126.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CU207408, EH507243, EH579809
    Related
    ENSDART00000169115.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    49379258..49383100 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.