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gpr180 G protein-coupled receptor 180 [ Danio rerio (zebrafish) ]

Gene ID: 100329381, updated on 4-Jan-2025

Summary

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Official Symbol
gpr180provided by ZNC
Official Full Name
G protein-coupled receptor 180provided by ZNC
Primary source
ZFIN:ZDB-GENE-130530-603
See related
Ensembl:ENSDARG00000099851 AllianceGenome:ZFIN:ZDB-GENE-130530-603
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to act upstream of or within G protein-coupled receptor signaling pathway and response to pheromone. Predicted to be located in membrane. Orthologous to human GPR180 (G protein-coupled receptor 180). [provided by Alliance of Genome Resources, Jan 2025]
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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See gpr180 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (59995190..60003676)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (59796281..59801974, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 122 Neighboring gene mitochondrial translational release factor 1 Neighboring gene sciellin Neighboring gene WW domain binding protein 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within G protein-coupled receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within response to pheromone IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
integral membrane protein GPR180
Names
zmp:0000000600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    59995190..60003676
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002662569.7 → XP_002662615.5  integral membrane protein GPR180 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RHB2
    Related
    ENSDARP00000132468.2, ENSDART00000163575.2

  2. XM_021477338.2 → XP_021333013.1  integral membrane protein GPR180 isoform X2

    UniProtKB/TrEMBL
    A0A8M9Q117
    Conserved Domains (1) summary
    cl21735
    Location:136 → 232
    Lung_7-TM_R; Lung seven transmembrane receptor
Nucleotide Protein Strain
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