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RPS29P6 ribosomal protein S29 pseudogene 6 [ Homo sapiens (human) ]

Gene ID: 100270903, updated on 17-Sep-2024

Summary

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Official Symbol
RPS29P6provided by HGNC
Official Full Name
ribosomal protein S29 pseudogene 6provided by HGNC
Primary source
HGNC:HGNC:35718
See related
Ensembl:ENSG00000230451 AllianceGenome:HGNC:35718
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPS29_1_32
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Genomic context

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See RPS29P6 in Genome Data Viewer
Location:
1p34.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (37330852..37330979)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (37194895..37195022)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (37796453..37796580)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr1:37678905-37679460 Neighboring gene RNA, U6 small nuclear 636, pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr1:37713576-37713770 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37739665-37740559 Neighboring gene RNA, 5S ribosomal pseudogene 43 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 765 Neighboring gene NANOG hESC enhancer GRCh37_chr1:37778734-37779253 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:37782055-37782555 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:37783288-37783862 Neighboring gene uncharacterized LOC107984942 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:37827606-37827793 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_7809 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37876230-37876730 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:37876731-37877231 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:37916959-37918158 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr1:37920349-37921548 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 671 Neighboring gene lncRNA induced by TGF-beta and antagonizes TGF-beta signaling 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_010290.1 

    Range
    101..228
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    37330852..37330979
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    37194895..37195022
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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