U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC100268146 zinc finger transcription factor YY1 [ Vitis vinifera (wine grape) ]

Gene ID: 100268146, updated on 3-Dec-2024

Summary

Go to the top of the page Help
Gene symbol
LOC100268146
Gene description
zinc finger transcription factor YY1
Locus tag
VIT_00023286001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC100268146 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 12 NC_081816.1 (22083162..22107769, complement)
102 previous assembly 12X (GCF_000003745.3) 12 NC_012018.3 (20085213..20107712, complement)

Chromosome 12 - NC_081816.1Genomic Context describing neighboring genes Neighboring gene zinc-finger homeodomain protein 4 Neighboring gene uncharacterized LOC104881048 Neighboring gene serine/threonine-protein kinase-like protein At5g23170 Neighboring gene transcription factor TCP8

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of PcG protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger transcription factor YY1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081816.1 Reference ASM3070453v1 Primary Assembly

    Range
    22083162..22107769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003633357.4 → XP_003633405.1  zinc finger transcription factor YY1 isoform X2

    See identical proteins and their annotated locations for XP_003633405.1

    UniProtKB/TrEMBL
    A5ATF9, D7TGW1
    Conserved Domains (3) summary
    COG5048
    Location:77 → 193
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:82 → 101
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:123 → 148
    zf-H2C2_2; Zinc-finger double domain

  2. XM_059741083.1 → XP_059597066.1  zinc finger transcription factor YY1 isoform X4

    UniProtKB/TrEMBL
    A5ATF9

  3. XM_010659722.3 → XP_010658024.1  zinc finger transcription factor YY1 isoform X1

    UniProtKB/TrEMBL
    A5ATF9
    Conserved Domains (3) summary
    COG5048
    Location:95 → 211
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:100 → 119
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:141 → 166
    zf-H2C2_2; Zinc-finger double domain

  4. XM_019223787.2 → XP_019079332.1  zinc finger transcription factor YY1 isoform X3

    UniProtKB/TrEMBL
    A5ATF9
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials