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LOC100267254 uncharacterized LOC100267254 [ Vitis vinifera (wine grape) ]

Gene ID: 100267254, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100267254
Gene description
uncharacterized LOC100267254
Locus tag
VIT_00036079001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100267254 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (23981543..23990220)
102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (20968063..20976697)

Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100267267 Neighboring gene uncharacterized LOC100262096 Neighboring gene F-box protein At2g27310 Neighboring gene photosystem I subunit O

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100267254
Names
protein phosphatase 1 regulatory subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

    Range
    23981543..23990220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002273040.5 → XP_002273076.2  uncharacterized protein LOC100267254

    See identical proteins and their annotated locations for XP_002273076.2

    UniProtKB/TrEMBL
    D7TCR0
    Conserved Domains (3) summary
    cd00116
    Location:37 → 233
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:43 → 64
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:176 → 235
    LRR_8; Leucine rich repeat

RNA

  1. XR_786106.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials