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LOC100263383 cyclin-dependent kinase C-2 [ Vitis vinifera (wine grape) ]

Gene ID: 100263383, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100263383
Gene description
cyclin-dependent kinase C-2
Locus tag
VIT_00037432001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
Also known as
GO:0004674 GO:0004672 GO:0000166 GO:0005524 GO:0006468
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Genomic context

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See LOC100263383 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (16877276..16901638, complement)
102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (13833651..13858003, complement)

Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene ABSCISIC ACID-INSENSITIVE 5-like protein 2 Neighboring gene uncharacterized LOC104879691 Neighboring gene probable serine/threonine-protein kinase PBL18 Neighboring gene probable alkaline/neutral invertase F

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II CTD heptapeptide repeat kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of transcription elongation by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cyclin-dependent protein kinase holoenzyme complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent kinase C-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

    Range
    16877276..16901638 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010653295.3 → XP_010651597.1  cyclin-dependent kinase C-2

    See identical proteins and their annotated locations for XP_010651597.1

    UniProtKB/TrEMBL
    F6H9Y5
    Conserved Domains (2) summary
    PTZ00024
    Location:31 → 337
    PTZ00024; cyclin-dependent protein kinase; Provisional
    cd07840
    Location:25 → 324
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

  2. XM_002272393.4 → XP_002272429.1  cyclin-dependent kinase C-2

    See identical proteins and their annotated locations for XP_002272429.1

    UniProtKB/TrEMBL
    F6H9Y5
    Conserved Domains (2) summary
    PTZ00024
    Location:31 → 337
    PTZ00024; cyclin-dependent protein kinase; Provisional
    cd07840
    Location:25 → 324
    STKc_CDK9_like; Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials