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LOC100260811 oxygen-evolving enhancer protein 1, chloroplastic [ Vitis vinifera (wine grape) ]

Gene ID: 100260811, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100260811
Gene description
oxygen-evolving enhancer protein 1, chloroplastic
Locus tag
VIT_00009624001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100260811 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 18 NC_081822.1 (9976423..9978048)
102 previous assembly 12X (GCF_000003745.3) 18 NC_012024.3 (10013436..10015007)

Chromosome 18 - NC_081822.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 18 Neighboring gene exocyst complex component SEC3A Neighboring gene dirigent protein 6 Neighboring gene probable hexosyltransferase MUCI70

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxygen evolving activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in photosystem II assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in photosystem II stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of photosystem II oxygen evolving complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
oxygen-evolving enhancer protein 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081822.1 Reference ASM3070453v1 Primary Assembly

    Range
    9976423..9978048
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002283663.4 → XP_002283699.1  oxygen-evolving enhancer protein 1, chloroplastic

    UniProtKB/TrEMBL
    A5BPG1, F6H029
    Conserved Domains (1) summary
    PLN00037
    Location:20 → 331
    PLN00037; photosystem II oxygen-evolving enhancer protein 1; Provisional
Nucleotide Protein
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