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LOC100259490 3-ketoacyl-CoA synthase 11 [ Vitis vinifera (wine grape) ]

Gene ID: 100259490, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100259490
Gene description
3-ketoacyl-CoA synthase 11
Locus tag
VIT_00035769001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100259490 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 4 NC_081808.1 (4157607..4160381, complement)
102 previous assembly 12X (GCF_000003745.3) 4 NC_012010.3 (4157745..4160504, complement)

Chromosome 4 - NC_081808.1Genomic Context describing neighboring genes Neighboring gene 26S proteasome regulatory subunit 8 homolog A Neighboring gene probable histone H2A variant 3 Neighboring gene carbon catabolite repressor protein 4 homolog 6 Neighboring gene uncharacterized LOC100249178

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyltransferase activity, transferring groups other than amino-acyl groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
3-ketoacyl-CoA synthase 11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081808.1 Reference ASM3070453v1 Primary Assembly

    Range
    4157607..4160381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002284715.5 → XP_002284751.1  3-ketoacyl-CoA synthase 11

    UniProtKB/TrEMBL
    A0A438F1S3, F6H3S9
    Conserved Domains (3) summary
    PLN02192
    Location:1 → 511
    PLN02192; 3-ketoacyl-CoA synthase
    pfam08392
    Location:94 → 383
    FAE1_CUT1_RppA; FAE1/Type III polyketide synthase-like protein
    cl21486
    Location:401 → 480
    Ketoacyl-synt_C; Beta-ketoacyl synthase, C-terminal domain
Nucleotide Protein
Heading Accession and Version

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