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LOC100258138 uncharacterized LOC100258138 [ Vitis vinifera (wine grape) ]

Gene ID: 100258138, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100258138
Gene description
uncharacterized LOC100258138
Locus tag
VIT_00029561001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100258138 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 9 NC_081813.1 (22869755..22881280)
102 previous assembly 12X (GCF_000003745.3) 9 NC_012015.3 (21550157..21561631)

Chromosome 9 - NC_081813.1Genomic Context describing neighboring genes Neighboring gene pyrophosphate-energized membrane proton pump 3 Neighboring gene uncharacterized LOC100242841 Neighboring gene protein SMALL AUXIN UP-REGULATED RNA 51 Neighboring gene auxin-responsive protein SAUR21

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100258138

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081813.1 Reference ASM3070453v1 Primary Assembly

    Range
    22869755..22881280
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002265966.5 → XP_002266002.1  uncharacterized protein LOC100258138

    See identical proteins and their annotated locations for XP_002266002.1

    UniProtKB/TrEMBL
    A5BQJ9, D7SS20
    Conserved Domains (3) summary
    sd00006
    Location:216 → 242
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:216 → 279
    TPR_11; TPR repeat
    pfam13428
    Location:216 → 257
    TPR_14; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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