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LOC100256123 putative phospholipid-transporting ATPase 9 [ Vitis vinifera (wine grape) ]

Gene ID: 100256123, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100256123
Gene description
putative phospholipid-transporting ATPase 9
Locus tag
VIT_00012005001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100256123 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 1 NC_081805.1 (2212623..2221305, complement)
102 previous assembly 12X (GCF_000003745.3) 1 NC_012007.3 (2253544..2262130, complement)

Chromosome 1 - NC_081805.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC104879359 Neighboring gene probable calcium-binding protein CML16 Neighboring gene tRNA(adenine(34)) deaminase, chloroplastic Neighboring gene lysine-rich arabinogalactan protein 19 Neighboring gene mitochondrial protein import protein ZIM17

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled intramembrane lipid transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid translocation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative phospholipid-transporting ATPase 9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081805.1 Reference ASM3070453v1 Primary Assembly

    Range
    2212623..2221305 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002280382.4 → XP_002280418.1  putative phospholipid-transporting ATPase 9

    UniProtKB/TrEMBL
    A0A438FZ26, F6HFR1
    Conserved Domains (5) summary
    TIGR01652
    Location:55 → 1147
    ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
    pfam13246
    Location:521 → 626
    Cation_ATPase; Cation transport ATPase (P-type)
    pfam16209
    Location:39 → 105
    PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
    pfam16212
    Location:890 → 1141
    PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
    cl21460
    Location:762 → 890
    HAD_like; Haloacid Dehalogenase-like Hydrolases
Nucleotide Protein
Heading Accession and Version

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