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LOC100255849 late embryogenesis abundant protein B19.3 [ Vitis vinifera (wine grape) ]

Gene ID: 100255849, updated on 3-Dec-2024

Summary

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Gene symbol
LOC100255849
Gene description
late embryogenesis abundant protein B19.3
Locus tag
VIT_00011188001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100255849 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 8 NC_081812.1 (9144807..9160246, complement)
102 previous assembly 12X (GCF_000003745.3) 8 NC_012014.3 (7969436..7984842, complement)

Chromosome 8 - NC_081812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132254148 Neighboring gene chlorophyll synthase, chloroplastic Neighboring gene vegetative cell wall protein gp1 Neighboring gene uncharacterized LOC132254161

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to abscisic acid IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
late embryogenesis abundant protein B19.3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081812.1 Reference ASM3070453v1 Primary Assembly

    Range
    9144807..9160246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002263178.4 → XP_002263214.1  late embryogenesis abundant protein B19.3

    See identical proteins and their annotated locations for XP_002263214.1

    UniProtKB/TrEMBL
    A0A438DAN4, F6H6R9
    Conserved Domains (1) summary
    pfam00477
    Location:2 → 128
    LEA_5; Small hydrophilic plant seed protein

  2. XM_059738926.1 → XP_059594909.1  late embryogenesis abundant protein B19.3

    UniProtKB/TrEMBL
    A0A438DAN4, F6H6R9

  3. XM_059738925.1 → XP_059594908.1  late embryogenesis abundant protein B19.3

    UniProtKB/TrEMBL
    A0A438DAN4, F6H6R9
Nucleotide Protein
Heading Accession and Version

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