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LOC100252442 uncharacterized LOC100252442 [ Vitis vinifera (wine grape) ]

Gene ID: 100252442, updated on 11-Apr-2024

Summary

Gene symbol
LOC100252442
Gene description
uncharacterized LOC100252442
Locus tag
VIT_00015520001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

See LOC100252442 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 11 NC_081815.1 (4398183..4400756)
102 previous assembly 12X (GCF_000003745.3) 11 NC_012017.3 (4421204..4423849)

Chromosome 11 - NC_081815.1Genomic Context describing neighboring genes Neighboring gene chaperone protein dnaJ 49 Neighboring gene uncharacterized LOC100257568 Neighboring gene pentatricopeptide repeat-containing protein At4g32430, mitochondrial Neighboring gene transfer RNA serine (anticodon AGA)

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex PubMed 
part_of box C/D methylation guide snoRNP complex PubMed 
located_in nucleolus PubMed 
part_of precatalytic spliceosome PubMed 
part_of small-subunit processome PubMed 

General protein information

Preferred Names
uncharacterized protein LOC100252442
Names
NHP2-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081815.1 Reference ASM3070453v1 Primary Assembly

    Range
    4398183..4400756
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002285097.4XP_002285133.1  uncharacterized protein LOC100252442 isoform X2

    UniProtKB/TrEMBL
    A0A438C0R9, F6HH82
    Conserved Domains (1) summary
    COG1358
    Location:11122
    Rpl7Ae; Ribosomal protein L7Ae or related RNA K-turn-binding protein [Translation, ribosomal structure and biogenesis]
  2. XM_059740689.1XP_059596672.1  uncharacterized protein LOC100252442 isoform X1

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