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LOC100252124 uncharacterized LOC100252124 [ Vitis vinifera (wine grape) ]

Gene ID: 100252124, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100252124
Gene description
uncharacterized LOC100252124
Locus tag
VIT_00014067001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100252124 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 19 NC_081823.1 (104416..105593)
102 previous assembly 12X (GCF_000003745.3) 19 NC_012025.3 (73940..75220)

Chromosome 19 - NC_081823.1Genomic Context describing neighboring genes Neighboring gene protein FRIGIDA Neighboring gene solanesyl diphosphate synthase 1, chloroplastic Neighboring gene glucan endo-1,3-beta-D-glucosidase Neighboring gene fatty-acid-binding protein 3, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oxidoreductase activity, acting on the CH-CH group of donors IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100252124
Names
very-long-chain enoyl-CoA reductase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081823.1 Reference ASM3070453v1 Primary Assembly

    Range
    104416..105593
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002285628.5 → XP_002285664.1  uncharacterized protein LOC100252124

    UniProtKB/TrEMBL
    A0A438HBQ5
    Conserved Domains (2) summary
    PLN02560
    Location:60 → 226
    PLN02560; enoyl-CoA reductase
    cl21511
    Location:154 → 259
    PEMT; Phospholipid methyltransferase
Nucleotide Protein
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