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LOC100242617 protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 [ Vitis vinifera (wine grape) ]

Gene ID: 100242617, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100242617
Gene description
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Locus tag
VIT_00036166001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100242617 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 6 NC_081810.1 (22909492..22927449, complement)
102 previous assembly 12X (GCF_000003745.3) 6 NC_012012.3 (19898335..19916299, complement)

Chromosome 6 - NC_081810.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g27610 Neighboring gene subtilisin-like serine-protease S Neighboring gene aluminum-activated malate transporter 2 Neighboring gene uncharacterized LOC109122763

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The high polyphenol content of grapevine cultivar tannat berries is conferred primarily by genes that are not shared with the reference genome. Da Silva C, et al. Plant Cell, 2013 Dec. PMID 24319081, Free PMC Article
  2. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  3. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vacuole organization IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1
Names
vacuolar protein sorting-associated protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081810.1 Reference ASM3070453v1 Primary Assembly

    Range
    22909492..22927449 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002262726.5 → XP_002262762.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X2

    UniProtKB/TrEMBL
    F6HHH1
    Conserved Domains (4) summary
    cd02678
    Location:4 → 78
    MIT_VPS4; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
    pfam09336
    Location:366 → 430
    Vps4_C; Vps4 C terminal oligomerization domain
    pfam17862
    Location:321 → 356
    AAA_lid_3; AAA+ lid domain
    cd19521
    Location:124 → 294
    RecA-like_VPS4; ATPase domain of vacuolar protein sorting-associated protein 4

  2. XM_059737651.1 → XP_059593634.1  protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
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