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LOC100242328 uncharacterized LOC100242328 [ Vitis vinifera (wine grape) ]

Gene ID: 100242328, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100242328
Gene description
uncharacterized LOC100242328
Locus tag
VIT_00034599001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100242328 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 13 NC_081817.1 (15713256..15719396)
102 previous assembly 12X (GCF_000003745.3) 13 NC_012019.3 (14701200..14707301)

Chromosome 13 - NC_081817.1Genomic Context describing neighboring genes Neighboring gene mitochondrial acidic protein MAM33 Neighboring gene nuclear pore complex protein NUP1 Neighboring gene uncharacterized LOC104881224 Neighboring gene AUGMIN subunit 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo transcriptome characterization of Vitis vinifera cv. Corvina unveils varietal diversity. Venturini L, et al. BMC Genomics, 2013 Jan 18. PMID 23331995, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-nucleotidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC100242328
Names
7-methylguanosine phosphate-specific 5'-nucleotidase A
cytosolic 5'-nucleotidase 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081817.1 Reference ASM3070453v1 Primary Assembly

    Range
    15713256..15719396
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002264452.4 → XP_002264488.1  uncharacterized protein LOC100242328 isoform X2

    See identical proteins and their annotated locations for XP_002264488.1

    UniProtKB/TrEMBL
    A0A438H3F4, D7T3A2
    Conserved Domains (1) summary
    cl21460
    Location:85 → 341
    HAD_like; Haloacid Dehalogenase-like Hydrolases

  2. XM_019224573.2 → XP_019080118.1  uncharacterized protein LOC100242328 isoform X3

  3. XM_059741811.1 → XP_059597794.1  uncharacterized protein LOC100242328 isoform X4

  4. XM_010660580.3 → XP_010658882.1  uncharacterized protein LOC100242328 isoform X1

    UniProtKB/TrEMBL
    A0A438H3F4
    Conserved Domains (1) summary
    pfam05822
    Location:91 → 347
    UMPH-1; Pyrimidine 5'-nucleotidase (UMPH-1)
Nucleotide Protein
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