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LOC100241814 peroxidase 42-like [ Vitis vinifera (wine grape) ]

Gene ID: 100241814, updated on 23-Oct-2023

Summary

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Gene symbol
LOC100241814
Gene description
peroxidase 42-like
Locus tag
VIT_00012727001
Gene type
protein coding
RefSeq status
MODEL
Organism
Vitis vinifera
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; Vitales; Vitaceae; Viteae; Vitis
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Genomic context

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See LOC100241814 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_09 current ASM3070453v1 (GCF_030704535.1) 10 NC_081814.1 (1159409..1161486)
102 previous assembly 12X (GCF_000003745.3) 10 NC_012016.3 (1056651..1058646)

Chromosome 10 - NC_081814.1Genomic Context describing neighboring genes Neighboring gene MYB-like transcription factor ETC3 Neighboring gene tRNA wybutosine-synthesizing protein 2/3/4 Neighboring gene uncharacterized LOC104880466 Neighboring gene calcium-dependent protein kinase 2 Neighboring gene protein S40-5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. Velasco R, et al. PLoS One, 2007 Dec 19. PMID 18094749, Free PMC Article
  2. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Jaillon O, et al. Nature, 2007 Sep 27. PMID 17721507
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hydrogen peroxide catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
peroxidase 42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030704535.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3070453v1 Primary Assembly

Genomic

  1. NC_081814.1 Reference ASM3070453v1 Primary Assembly

    Range
    1159409..1161486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002274733.4 → XP_002274769.1  peroxidase 42

    See identical proteins and their annotated locations for XP_002274769.1

    UniProtKB/TrEMBL
    A0A438JG18, A5AGY5
    Conserved Domains (2) summary
    cd00693
    Location:34 → 329
    secretory_peroxidase; Horseradish peroxidase and related secretory plant peroxidases
    PLN03030
    Location:34 → 331
    PLN03030; cationic peroxidase; Provisional
Nucleotide Protein
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