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TRI-TAT2-2 tRNA-Ile (anticodon TAT) 2-2 [ Homo sapiens (human) ]

Gene ID: 100189028, updated on 10-Dec-2024

Summary

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Official Symbol
TRI-TAT2-2provided by HGNC
Official Full Name
tRNA-Ile (anticodon TAT) 2-2provided by HGNC
Primary source
HGNC:HGNC:34587
See related
AllianceGenome:HGNC:34587
Gene type
tRNA
RefSeq status
MODEL
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TRNAI2
Expression
Broad expression in endometrium (RPKM 1.1), thyroid (RPKM 1.0) and 17 other tissues See more
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Genomic context

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See TRI-TAT2-2 in Genome Data Viewer
Location:
6p22.2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (27020346..27020439)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (26888842..26888935)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (26988125..26988218)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:26845091-26845270 Neighboring gene POM121 transmembrane nucleoporin like 6, pseudogene Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26853600-26854455 Neighboring gene GUSB pseudogene 2 Neighboring gene NANOG hESC enhancer GRCh37_chr6:26876271-26876881 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:26924432-26925130 Neighboring gene long intergenic non-protein coding RNA 240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24256 Neighboring gene LINC00240 antisense RNA regulating promoter methylation Neighboring gene vomeronasal 1 receptor 12, pseudogene Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24257 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24258 Neighboring gene vomeronasal 1 receptor 13 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • tRNA-Ile (TAT) 2-2
  • transfer RNA isoleucine 2 (anticodon UAU)
  • transfer RNA-Ile (TAT) 2-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    27020346..27020439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    26888842..26888935
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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