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ttc13 tetratricopeptide repeat domain 13 [ Danio rerio (zebrafish) ]

Gene ID: 100170789, updated on 9-Dec-2024

Summary

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Official Symbol
ttc13provided by ZNC
Official Full Name
tetratricopeptide repeat domain 13provided by ZNC
Primary source
ZFIN:ZDB-GENE-080722-25
See related
Ensembl:ENSDARG00000063242 AllianceGenome:ZFIN:ZDB-GENE-080722-25
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:194598
Summary
Orthologous to human TTC13 (tetratricopeptide repeat domain 13). [provided by Alliance of Genome Resources, Dec 2024]
Annotation information
Annotation category: suggests misassembly
Orthologs
human mouse all
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Genomic context

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See ttc13 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (3954579..3997531, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (4034078..4077319)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 11A Neighboring gene selenoprotein L Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene family with sequence similarity 89 member A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
tetratricopeptide repeat protein 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001130627.1 → NP_001124099.1  tetratricopeptide repeat protein 13 precursor

    See identical proteins and their annotated locations for NP_001124099.1

    Status: PROVISIONAL

    Source sequence(s)
    BC163293
    UniProtKB/TrEMBL
    B3DIY5
    Related
    ENSDARP00000086649.5, ENSDART00000092217.6
    Conserved Domains (3) summary
    smart00028
    Location:283 → 316
    TPR; Tetratricopeptide repeats
    sd00006
    Location:215 → 243
    TPR; TPR repeat [structural motif]
    pfam13414
    Location:248 → 313
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    3954579..3997531 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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