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LOC100151335 PI-PLC X domain-containing protein 1 [ Danio rerio (zebrafish) ]

Gene ID: 100151335, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100151335
Gene description
PI-PLC X domain-containing protein 1
See related
Ensembl:ENSDARG00000071139
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Orthologs
all
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Genomic context

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See LOC100151335 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (9142598..9150371)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (8906904..8914837)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene VPS16 core subunit of CORVET and HOPS complexes Neighboring gene regucalcin Neighboring gene zgc:64065 Neighboring gene zgc:112023

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
PI-PLC X domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    9142598..9150371
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001923441.8 → XP_001923476.1  PI-PLC X domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8M1QHW4, E7FCY6
    Related
    ENSDARP00000125876.1, ENSDART00000151615.2
    Conserved Domains (1) summary
    cd08616
    Location:14 → 298
    PI-PLCXD1c; Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395249.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    323825..331729
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021474054.2 → XP_021329729.1  PI-PLC X domain-containing protein 1

    UniProtKB/TrEMBL
    A0A8M9PXW8
    Conserved Domains (1) summary
    cd08616
    Location:14 → 298
    PI-PLCXD1c; Catalytic domain of phosphatidylinositol-specific phospholipase C, X domain containing 1
Nucleotide Protein
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