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si:dkeyp-69b9.6 si:dkeyp-69b9.6 [ Danio rerio (zebrafish) ]

Gene ID: 100148274, updated on 4-Jan-2025

Summary

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Official Symbol
si:dkeyp-69b9.6provided by ZNC
Official Full Name
si:dkeyp-69b9.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-100922-227
See related
Ensembl:ENSDARG00000014825 AllianceGenome:ZFIN:ZDB-GENE-100922-227
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:dkeyp-69b9.6 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (13616239..13623908, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (13726121..13729774, complement)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene ntl-dependent gene 5 Neighboring gene D site albumin promoter binding protein b Neighboring gene protein shisa-7 Neighboring gene ubiquitin-conjugating enzyme E2S

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 91

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    13616239..13623908 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021466868.2 → XP_021322543.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A0R4IJ19, A0A8M9NZL7
    Related
    ENSDARP00000136947.1, ENSDART00000146953.3
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021466867.2 → XP_021322542.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A0R4IJ19, A0A8M9NZL7
    Related
    ENSDARP00000135742.1, ENSDART00000164344.2
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain

  3. XM_021466869.2 → XP_021322544.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A0R4IJ19, A0A8M9NZL7
    Related
    ENSDARP00000138511.1, ENSDART00000168978.2
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394957.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    167508..175178 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021472965.2 → XP_021328640.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A8M9Q5J1
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain

  2. XM_021472964.2 → XP_021328639.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A8M9Q5J1
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain

  3. XM_021472966.2 → XP_021328641.1  zinc finger protein 91

    UniProtKB/TrEMBL
    A0A8M9Q5J1
    Conserved Domains (4) summary
    PHA00733
    Location:1342 → 1393
    PHA00733; hypothetical protein
    sd00017
    Location:882 → 902
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:500 → 522
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:895 → 918
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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