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FRG1HP FSHD region gene 1 family member H, pseudogene [ Homo sapiens (human) ]

Gene ID: 100132352, updated on 10-Dec-2024

Summary

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Official Symbol
FRG1HPprovided by HGNC
Official Full Name
FSHD region gene 1 family member H, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:51767
See related
Ensembl:ENSG00000291075 AllianceGenome:HGNC:51767
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in lymph node (RPKM 8.2), spleen (RPKM 8.1) and 25 other tissues See more
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Genomic context

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See FRG1HP in Genome Data Viewer
Location:
9p11.2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (40992261..41039103)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (42255882..42302734, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (69065490..69112332)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak7256 silencer Neighboring gene microRNA 1299 Neighboring gene uncharacterized LOC107986997 Neighboring gene NANOG hESC enhancer GRCh37_chr9:68695497-68695998 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:69048303-69048804 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr9:68712489-68713157 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr9:68725219-68725948 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28425 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28426 Neighboring gene phosphoglucomutase 5 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19920 Neighboring gene uncharacterized LOC124902161 Neighboring gene uncharacterized LOC105376058

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Bibliography

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Related articles in PubMed

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. Brandenberger R, et al. Nat Biotechnol, 2004 Jun. PMID 15146197
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • FSHD region gene 1 pseudogene

Clone Names

  • FLJ18209

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034006.3 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353763
    Related
    ENST00000749677.1

  2. NR_156730.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL353763

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    40992261..41039103
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    42255882..42302734 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials