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RPL39P13 ribosomal protein L39 pseudogene 13 [ Homo sapiens (human) ]

Gene ID: 100130802, updated on 10-Dec-2024

Summary

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Official Symbol
RPL39P13provided by HGNC
Official Full Name
ribosomal protein L39 pseudogene 13provided by HGNC
Primary source
HGNC:HGNC:36705
See related
AllianceGenome:HGNC:36705
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
RPL39_3_72
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Genomic context

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See RPL39P13 in Genome Data Viewer
Location:
1p22.1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (91600118..91600507)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (91444711..91445098)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (92065675..92066064)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1303 Neighboring gene uncharacterized LOC102723436 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1304 Neighboring gene cell division cycle 7 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1305 Neighboring gene WD repeat domain 82 pseudogene 2 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:92047752-92048951 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92076797-92077298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92077299-92077798 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:92110412-92110978 Neighboring gene heat shock protein 90 beta family member 3, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92149313-92149816 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1306 Neighboring gene transforming growth factor beta receptor 3 Neighboring gene Sharpr-MPRA regulatory region 4673 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr1:92202312-92203511 Neighboring gene Sharpr-MPRA regulatory region 7299 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:92218493-92218993 Neighboring gene uncharacterized LOC124904659

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative analysis of processed ribosomal protein pseudogenes in four mammalian genomes. Balasubramanian S, et al. Genome Biol, 2009. PMID 19123937, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_011255.2 

    Range
    101..490
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    91600118..91600507
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    91444711..91445098
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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