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CENPUP1 centromere protein U pseudogene 1 [ Homo sapiens (human) ]

Gene ID: 100130384, updated on 17-Sep-2024

Summary

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Official Symbol
CENPUP1provided by HGNC
Official Full Name
centromere protein U pseudogene 1provided by HGNC
Primary source
HGNC:HGNC:49889
See related
AllianceGenome:HGNC:49889
Gene type
pseudo
RefSeq status
INFERRED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See CENPUP1 in Genome Data Viewer
Location:
11p15.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (13756020..13757764)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (13848236..13849988)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (13777567..13779311)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 36 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3168 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 3169 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4466 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 4467 Neighboring gene fatty acyl-CoA reductase 1 Neighboring gene ribosomal protein L39 pseudogene 26 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr11:13782751-13783950 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr11:13798703-13799259 Neighboring gene long intergenic non-protein coding RNA 2548 Neighboring gene long intergenic non-protein coding RNA 2545 Neighboring gene RNA, 5S ribosomal pseudogene 331

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • MLF1 interacting protein pseudogene

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_021809.2 

    Range
    101..1845
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    13756020..13757764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    13848236..13849988
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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