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ERCC6L2-AS1 ERCC6L2 antisense RNA 1 [ Homo sapiens (human) ]

Gene ID: 100128782, updated on 22-Oct-2024

Summary

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Official Symbol
ERCC6L2-AS1provided by HGNC
Official Full Name
ERCC6L2 antisense RNA 1provided by HGNC
Primary source
HGNC:HGNC:27858
See related
Ensembl:ENSG00000175611 AllianceGenome:HGNC:27858
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NAG11; NAG12; C9orf130; LINC00476
Expression
Ubiquitous expression in prostate (RPKM 1.4), ovary (RPKM 1.4) and 25 other tissues See more
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Genomic context

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See ERCC6L2-AS1 in Genome Data Viewer
Location:
9q22.32
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (95806088..95875977, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (107977446..108047347, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (98568370..98638259, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene Sharpr-MPRA regulatory region 8876 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98431260-98432176 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98432177-98433092 Neighboring gene proteasome subunit alpha 7 pseudogene 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr9:98472872-98473055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28641 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98499106-98499628 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98499629-98500151 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_110728 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20074 Neighboring gene uncharacterized LOC105376161 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:98534876-98535833 Neighboring gene uncharacterized LOC107987103 Neighboring gene Sharpr-MPRA regulatory region 9073 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28642 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr9:98596601-98597800 Neighboring gene uncharacterized LOC124902221 Neighboring gene Sharpr-MPRA regulatory region 6609 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28643 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28644 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28645 Neighboring gene H3K27ac hESC enhancer GRCh37_chr9:98637828-98638702 Neighboring gene RNA, U2 small nuclear 46, pseudogene Neighboring gene ERCC excision repair 6 like 2 Neighboring gene RNA, 5S ribosomal pseudogene 289 Neighboring gene PARK7 pseudogene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1. Cui G, et al. Radiat Res, 2021 Mar 1. PMID 33370431
  2. DNA sequence and analysis of human chromosome 9. Humphray SJ, et al. Nature, 2004 May 27. PMID 15164053, Free PMC Article
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
  4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1.
    Title: LINC00476 Suppresses the Progression of Non-Small Cell Lung Cancer by Inducing the Ubiquitination of SETDB1.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Markers

Other Names

  • long intergenic non-protein coding RNA 476
  • nasopharyngeal carcinoma-associated gene 12

Clone Names

  • FLJ34818, FLJ34826

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_023389.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site at its 5' end, and includes alternate exon structure at its 3' end, compared to variant 1.
    Source sequence(s)
    AF194971, AL389954
    Related
    ENST00000321517.4

  2. NR_023390.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript.
    Source sequence(s)
    AK092137, AK092145, AL354861, AL389954, BU687794

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    95806088..95875977 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    107977446..108047347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8WZB0.1 GenPept UniProtKB/Swiss-Prot:Q8WZB0

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Chemical Information
Molecular Biology Databases
Research Materials