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ntn5.L netrin 5 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 100127305, updated on 4-Jan-2025

Summary

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Official Symbol
ntn5.L
Official Full Name
netrin 5 L homeolog
Primary source
Xenbase:XB-GENE-22063028
Locus tag
XELAEV_18035933mg
See related
EnsemblRapid:ENSXLAG00005032634 AllianceGenome:Xenbase:XB-GENE-22063028
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Summary
Predicted to be located in cytoplasm and extracellular region. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See ntn5.L in Genome Data Viewer
Location:
chromosome: 7L
Exon count:
7
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 7L NC_054383.1 (110797030..110869283, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 7L NC_030736.1 (100322027..100394476, complement)

Chromosome 7L - NC_054383.1Genomic Context describing neighboring genes Neighboring gene transfer RNA leucine (anticodon AAG) Neighboring gene sulfotransferase family 2B member 1 L homeolog Neighboring gene myoskeletin L homeolog Neighboring gene Ras interacting protein 1 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Netrin-5
Names
Netrin-1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001112872.1 → NP_001106343.1  Netrin-5 precursor

    See identical proteins and their annotated locations for NP_001106343.1

    Status: PROVISIONAL

    Source sequence(s)
    BC155916
    UniProtKB/TrEMBL
    A0A974CGN0, A9JS48
    Related
    ENSXLAP00005097744.1, ENSXLAT00005099551.1
    Conserved Domains (4) summary
    cd00055
    Location:395 → 444
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd03579
    Location:484 → 598
    NTR_netrin-1_like; NTR domain, Netrin-1-like subfamily; The C-terminal NTR domain of netrins is also called domain C in the context of C. elegans netrin UNC-6. Netrins are secreted proteins that function as tropic cues in the direction of axon growth and cell migration ...
    pfam00053
    Location:333 → 393
    Laminin_EGF; Laminin EGF domain
    pfam00055
    Location:61 → 276
    Laminin_N; Laminin N-terminal (Domain VI)

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054383.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    110797030..110869283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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