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zgc:173587 zgc:173587 [ Danio rerio (zebrafish) ]

Gene ID: 100126107, updated on 9-Dec-2024

Summary

Official Symbol
zgc:173587provided by ZNC
Official Full Name
zgc:173587provided by ZNC
Primary source
ZFIN:ZDB-GENE-071004-56
See related
Ensembl:ENSDARG00000075482 AllianceGenome:ZFIN:ZDB-GENE-071004-56
Gene type
protein coding
RefSeq status
PREDICTED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable DNA binding activity and protein heterodimerization activity. Predicted to be a structural constituent of chromatin. Predicted to be part of nucleosome. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See zgc:173587 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 7 NC_007118.7 (73827805..73829243)
105 previous assembly GRCz10 (GCF_000002035.5) 7 NC_007118.6 (73604641..73606079)

Chromosome 7 - NC_007118.7Genomic Context describing neighboring genes Neighboring gene histone H3-like Neighboring gene histone H4 Neighboring gene zgc:92594 Neighboring gene caspase activity and apoptosis inhibitor 1 Neighboring gene histone H3-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables structural constituent of chromatin IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of nucleosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
uncharacterized protein LOC100126107
Names
Histone H2B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109836.1NP_001103306.1  uncharacterized protein LOC100126107

    See identical proteins and their annotated locations for NP_001103306.1

    Status: PREDICTED

    Source sequence(s)
    BC152107
    UniProtKB/TrEMBL
    A7MCA8
    Related
    ENSDARP00000101525.2, ENSDART00000109316.3
    Conserved Domains (2) summary
    smart00427
    Location:26122
    H2B; Histone H2B
    pfam00125
    Location:2100
    Histone; Core histone H2A/H2B/H3/H4

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007118.7 Reference GRCz11 Primary Assembly

    Range
    73827805..73829243
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)