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EMP1 epithelial membrane protein 1 [ Sus scrofa (pig) ]

Gene ID: 100101477, updated on 17-Aug-2024

Summary

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Official Symbol
EMP1provided by VGNC
Official Full Name
epithelial membrane protein 1provided by VGNC
Primary source
VGNC:VGNC:87688
See related
Ensembl:ENSSSCG00000036723
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in subcutaneous adipose (RPKM 168.5), lung (RPKM 109.9) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See EMP1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (59245317..59267466, complement)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene glutamate ionotropic receptor NMDA type subunit 2B Neighboring gene ferritin light chain-like Neighboring gene uncharacterized LOC110260735 Neighboring gene family with sequence similarity 234 member B Neighboring gene germ cell associated 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010447.5 Chromosome 5 Reference Sscrofa11.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. The epithelial membrane protein 1 is a novel tight junction protein of the blood-brain barrier. Bangsow T, et al. J Cereb Blood Flow Metab, 2008 Jun. PMID 18382472
  2. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. identifies EMP1 as a novel tight junction-associated protein of the blood-brain barrier
    Title: The epithelial membrane protein 1 is a novel tight junction protein of the blood-brain barrier.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
epithelial membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099940.1 → NP_001093410.1  epithelial membrane protein 1

    See identical proteins and their annotated locations for NP_001093410.1

    Status: PROVISIONAL

    Source sequence(s)
    EF577081
    UniProtKB/TrEMBL
    A0A8D0TXM7, A0A8D2A2S4, A6N1V5
    Conserved Domains (1) summary
    pfam00822
    Location:1 → 154
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    59245317..59267466 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021090848.1 → XP_020946507.1  epithelial membrane protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A287B0D8, A0A4X1V7Y2, A0A8D0S113, A0A8D0TXM7, A0A8D2A2S4
    Related
    ENSSSCP00000049883.1, ENSSSCT00000059795.2
    Conserved Domains (1) summary
    pfam00822
    Location:1 → 154
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_021090850.1 → XP_020946509.1  epithelial membrane protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A287B0D8, A0A4X1V7Y2, A0A8D0S113, A0A8D0TXM7, A0A8D2A2S4
    Conserved Domains (1) summary
    pfam00822
    Location:1 → 154
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

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