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sugp1 SURP and G patch domain containing 1 [ Danio rerio (zebrafish) ]

Gene ID: 100073344, updated on 4-Jan-2025

Summary

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Official Symbol
sugp1provided by ZNC
Official Full Name
SURP and G patch domain containing 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-070615-33
See related
AllianceGenome:ZFIN:ZDB-GENE-070615-33
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:165601
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within RNA processing. Predicted to be located in nucleus. Orthologous to human SUGP1 (SURP and G-patch domain containing 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See sugp1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (58905228..58919980, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (58807929..58822721, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438156 Neighboring gene MAU2 sister chromatid cohesion factor Neighboring gene uncharacterized LOC108180196 Neighboring gene uncharacterized LOC137488394

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Toolbox for Efficient Proximity-Dependent Biotinylation in Zebrafish Embryos. Rosenthal SM, et al. Mol Cell Proteomics, 2021. PMID 34332124, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within RNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
SURP and G-patch domain-containing protein 1; splicing factor 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    58905228..58919980 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468406.2 → XP_021324081.1  SURP and G-patch domain-containing protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PPA2
    Conserved Domains (2) summary
    smart00443
    Location:515 → 561
    G_patch; glycine rich nucleic binding domain
    pfam01805
    Location:262 → 313
    Surp; Surp module

  2. XM_003197980.6 → XP_003198028.2  SURP and G-patch domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8M1RIH6
    Conserved Domains (2) summary
    pfam01585
    Location:522 → 566
    G-patch; G-patch domain
    pfam01805
    Location:266 → 317
    Surp; Surp module

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001098780.1: Suppressed sequence

    Description
    NM_001098780.1: This RefSeq was temporarily suppressed because the CDS was partial.
Nucleotide Protein
Heading Accession and Version

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