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PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 [ Equus caballus (horse) ]

Gene ID: 100059479, updated on 18-Dec-2024

Summary

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Official Symbol
PLOD3provided by VGNC
Official Full Name
procollagen-lysine,2-oxoglutarate 5-dioxygenase 3provided by VGNC
Primary source
VGNC:VGNC:21587
See related
Ensembl:ENSECAG00000021913
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See PLOD3 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_12 current TB-T2T (GCF_041296265.1) 13 NC_091696.1 (10430723..10438545, complement)
RS_2024_08 previous assembly EquCab3.0 (GCF_002863925.1) 13 NC_009156.3 (9454925..9462763, complement)

Chromosome 13 - NC_091696.1Genomic Context describing neighboring genes Neighboring gene N-acetyltransferase 16 (putative) Neighboring gene monoacylglycerol O-acyltransferase 3 Neighboring gene uncharacterized LOC138917098 Neighboring gene zinc finger HIT-type containing 1 Neighboring gene uncharacterized LOC111776197 Neighboring gene claudin 15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Thoroughbred Stallion gene expression
  • BioProject: PRJEB53382
  • Analysis date: Mon Jan 06 09:53:19 2025

Bibliography

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Related articles in PubMed

  1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_041296265.1-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference TB-T2T Primary Assembly

Genomic

  1. NC_091696.1 Reference TB-T2T Primary Assembly

    Range
    10430723..10438545 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005598666.4 → XP_005598723.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X3

    UniProtKB/TrEMBL
    F7B3H1
    Related
    ENSECAP00000072560.1
    Conserved Domains (1) summary
    smart00702
    Location:578 → 741
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  2. XM_005598665.4 → XP_005598722.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

    UniProtKB/TrEMBL
    F7B3H1
    Conserved Domains (1) summary
    smart00702
    Location:610 → 773
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues

  3. XM_023655380.2 → XP_023511148.1  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

    UniProtKB/TrEMBL
    F7B3H1
    Related
    ENSECAP00000019966.3
    Conserved Domains (1) summary
    smart00702
    Location:588 → 751
    P4Hc; Prolyl 4-hydroxylase alpha subunit homologues
Nucleotide Protein
Heading Accession and Version

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