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H2al1c H2A histone family member L1C [ Mus musculus (house mouse) ]

Gene ID: 100042929, updated on 27-Nov-2024

Summary

Official Symbol
H2al1cprovided by MGI
Official Full Name
H2A histone family member L1Cprovided by MGI
Primary source
MGI:MGI:3711280
See related
Ensembl:ENSMUSG00000096097 AllianceGenome:MGI:3711280
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm14477
Summary
Orthologous to human H2AL3 (H2A.L variant histone 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See H2al1c in Genome Data Viewer
Location:
X A1.1; X 6.04 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (11171894..11172211)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (11305655..11305972)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene H2A histone family member L1A Neighboring gene H2A histone family member L1B Neighboring gene H2A histone family member L1D Neighboring gene H2A histone family member L1E

Genomic regions, transcripts, and products

General protein information

Preferred Names
histone cluster 2 family member
Names
histone H2A family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001242949.1NP_001229878.1  histone cluster 2 family member

    See identical proteins and their annotated locations for NP_001229878.1

    Status: VALIDATED

    Source sequence(s)
    BX294183
    Consensus CDS
    CCDS57730.1
    UniProtKB/Swiss-Prot
    Q5M8Q2
    Related
    ENSMUSP00000135929.2, ENSMUST00000178806.2
    Conserved Domains (1) summary
    cl25693
    Location:5094
    H2A; Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    11171894..11172211
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)