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Gm10230 predicted gene 10230 [ Mus musculus (house mouse) ]

Gene ID: 100042175, updated on 27-Nov-2024

Summary

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Official Symbol
Gm10230provided by MGI
Official Full Name
predicted gene 10230provided by MGI
Primary source
MGI:MGI:3710515
See related
Ensembl:ENSMUSG00000095546 AllianceGenome:MGI:3710515
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 3.0) See more
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Genomic context

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See Gm10230 in Genome Data Viewer
Location:
X A2; X 18.4 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (27357518..27380426, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (27472034..27494942, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene predicted pseudogene 7375 Neighboring gene predicted gene, 42101 Neighboring gene predicted gene 2101 Neighboring gene predicted pseudogene 7386

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Sex-specific gene expression during meiotic prophase I: Xlr (X linked, lymphocyte regulated), not its male homologue Xmr (Xlr related, meiosis regulated), is expressed in mouse oocytes. Escalier D, et al. Biol Reprod, 2002 Nov. PMID 12390899
  2. The meiosis-specific Xmr gene product is homologous to the lymphocyte Xlr protein and is a component of the XY body. Calenda A, et al. EMBO J, 1994 Jan 1. PMID 8306953, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein LOC100042175
Names
Xlr-related, meiosis regulated

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001099347.3 → NP_001092817.1  uncharacterized protein LOC100042175

    See identical proteins and their annotated locations for NP_001092817.1

    Status: VALIDATED

    Source sequence(s)
    BX813306
    Consensus CDS
    CCDS53029.1
    UniProtKB/TrEMBL
    Q62478
    Related
    ENSMUSP00000136764.2, ENSMUST00000178745.2
    Conserved Domains (1) summary
    pfam04803
    Location:130 → 209
    Cor1; Cor1/Xlr/Xmr conserved region

  2. NM_001359718.1 → NP_001346647.1  uncharacterized protein LOC100042175

    Status: VALIDATED

    Source sequence(s)
    BX813306
    Consensus CDS
    CCDS53029.1
    UniProtKB/TrEMBL
    Q62478
    Related
    ENSMUSP00000114126.2, ENSMUST00000119362.8
    Conserved Domains (1) summary
    pfam04803
    Location:130 → 209
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    27357518..27380426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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