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Gm3005 predicted gene 3005 [ Mus musculus (house mouse) ]

Gene ID: 100040870, updated on 27-Nov-2024

Summary

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Official Symbol
Gm3005provided by MGI
Official Full Name
predicted gene 3005provided by MGI
Primary source
MGI:MGI:3781183
See related
Ensembl:ENSMUSG00000095195 AllianceGenome:MGI:3781183
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
100040859
Expression
Broad expression in CNS E18 (RPKM 4.1), whole brain E14.5 (RPKM 2.6) and 16 other tissues See more
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Genomic context

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See Gm3005 in Genome Data Viewer
Location:
14 A2; 14 1.95 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (18875553..18898512, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (3571683..3594220)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3012 Neighboring gene predicted gene, 53824 Neighboring gene predicted gene 2977 Neighboring gene predicted gene, 46462 Neighboring gene ribosomal protein L3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
uncharacterized protein LOC100040870

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001374134.1 → NP_001361063.1  uncharacterized protein LOC100040870

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest transcript. Variants 1, 2, and 3 all encode the same protein.
    Source sequence(s)
    AC186378
    UniProtKB/TrEMBL
    A0AA74KT78, A6NAT4, A6NAT5
    Related
    ENSMUSP00000159742.1, ENSMUST00000249384.1
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  2. NM_001374135.1 → NP_001361064.1  uncharacterized protein LOC100040870

    Status: VALIDATED

    Source sequence(s)
    AC186378
    UniProtKB/TrEMBL
    A0AA74KT78, A6NAT4, A6NAT5
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

  3. NM_001374136.1 → NP_001361065.1  uncharacterized protein LOC100040870

    Status: VALIDATED

    Source sequence(s)
    AC186378
    UniProtKB/TrEMBL
    A0AA74KT78, A6NAT4, A6NAT5
    Conserved Domains (1) summary
    pfam04822
    Location:1 → 73
    Takusan

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    18875553..18898512 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036158304.1 → XP_036014197.1  uncharacterized protein LOC100040870 isoform X1

    UniProtKB/TrEMBL
    A0AA74KSW7
    Conserved Domains (1) summary
    pfam04822
    Location:101 → 181
    Takusan
Nucleotide Protein
Heading Accession and Version

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