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actr3b actin related protein 3B [ Danio rerio (zebrafish) ]

Gene ID: 100038776, updated on 9-Dec-2024

Summary

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Official Symbol
actr3bprovided by ZNC
Official Full Name
actin related protein 3Bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-10
See related
Ensembl:ENSDARG00000008790 AllianceGenome:ZFIN:ZDB-GENE-070424-10
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:158823
Summary
Predicted to contribute to actin filament binding activity. Human ortholog(s) of this gene implicated in opisthorchiasis. Orthologous to several human genes including ACTR3B (actin related protein 3B). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See actr3b in Genome Data Viewer
Location:
chromosome: 24
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (7291499..7322187, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (7262180..7292859, complement)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene threonine synthase like 1 Neighboring gene dipeptidyl-peptidase 6a Neighboring gene sterile alpha motif domain-containing protein 3 Neighboring gene X-ray repair complementing defective repair in Chinese hamster cells 2 Neighboring gene lysine (K)-specific methyltransferase 2Ca Neighboring gene putative mediator of RNA polymerase II transcription subunit 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A Systems Biology Approach to the Coordination of Defensive and Offensive Molecular Mechanisms in the Innate and Adaptive Host-Pathogen Interaction Networks. Wu CC, et al. PLoS One, 2016. PMID 26881892, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
actin-related protein 3B
Names
ARP3 actin related protein 3 homolog B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089556.1 → NP_001083025.1  actin-related protein 3B

    See identical proteins and their annotated locations for NP_001083025.1

    Status: PROVISIONAL

    Source sequence(s)
    BC129472
    UniProtKB/TrEMBL
    A2VD47
    Related
    ENSDARP00000137724.2, ENSDART00000167570.2
    Conserved Domains (1) summary
    COG5277
    Location:1 → 318
    COG5277; Actin-related protein [Cytoskeleton]

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    7291499..7322187 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005162481.5 → XP_005162538.1  actin-related protein 3B isoform X1

    UniProtKB/TrEMBL
    A0A8M2B9D0
    Related
    ENSDARP00000045149.6, ENSDART00000045150.7
    Conserved Domains (2) summary
    COG5277
    Location:1 → 411
    COG5277; Actin-related protein [Cytoskeleton]
    PTZ00280
    Location:3 → 416
    PTZ00280; Actin-related protein 3; Provisional

  2. XM_009297226.4 → XP_009295501.1  actin-related protein 3B isoform X2

    UniProtKB/TrEMBL
    A0A8M3AVU7
    Conserved Domains (2) summary
    COG5277
    Location:45 → 406
    COG5277; Actin-related protein [Cytoskeleton]
    PTZ00280
    Location:31 → 411
    PTZ00280; Actin-related protein 3; Provisional

  3. XM_021470094.2 → XP_021325769.1  actin-related protein 3B isoform X3

    UniProtKB/TrEMBL
    A0A8M9PLJ7
    Conserved Domains (1) summary
    cl25542
    Location:1 → 327
    Actin
Nucleotide Protein
Heading Accession and Version

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