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Gm11837 predicted gene 11837 [ Mus musculus (house mouse) ]

Gene ID: 100038514, updated on 27-Nov-2024

Summary

Official Symbol
Gm11837provided by MGI
Official Full Name
predicted gene 11837provided by MGI
Primary source
MGI:MGI:3702175
See related
Ensembl:ENSMUSG00000086587 AllianceGenome:MGI:3702175
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in several structures, including heart; intestine; liver; lung; and metanephros. Orthologous to human C8orf88 (chromosome 8 open reading frame 88). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in testis adult (RPKM 75.4), frontal lobe adult (RPKM 5.2) and 2 other tissues See more
Orthologs
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Genomic context

See Gm11837 in Genome Data Viewer
Location:
4 A2; 4 6.44 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (14929908..14953030)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (14929828..14953031)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6153 Neighboring gene OTU domain containing 6B Neighboring gene phosphatidylinositol-4,5-bisphosphate 4-phosphatase 2 Neighboring gene STARR-seq mESC enhancer starr_09640 Neighboring gene N-terminal EF-hand calcium binding protein 1 Neighboring gene predicted gene 11844 Neighboring gene STARR-seq mESC enhancer starr_09641 Neighboring gene predicted gene, 36801

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C8orf88 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243100.1NP_001230029.1  uncharacterized protein C8orf88 homolog

    See identical proteins and their annotated locations for NP_001230029.1

    Status: VALIDATED

    Source sequence(s)
    AL831792
    UniProtKB/TrEMBL
    A0A9L6KDP1
    Related
    ENSMUSP00000159571.1, ENSMUST00000136992.8
  2. NM_001356579.1NP_001343508.1  uncharacterized protein C8orf88 homolog

    Status: VALIDATED

    Source sequence(s)
    AV044409, CD363818, CJ189634
    UniProtKB/TrEMBL
    A0A9L6KDP1
    Related
    ENSMUSP00000159570.1, ENSMUST00000137532.9

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    14929908..14953030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)