rbfa ribosome binding factor A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbfaprovided by ZNC
Official Full Name: ribosome binding factor Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-070410-83
See related: Ensembl:ENSDARG00000073705 AllianceGenome:ZFIN:ZDB-GENE-070410-83
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:162590
Summary: Predicted to act upstream of or within rRNA processing. Orthologous to human RBFA (ribosome binding factor A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 16

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	16	NC_007127.7 (25361515..25368048, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	16	NC_007127.6 (25449281..25453016, complement)

Chromosome 16 - NC_007127.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within rRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in cellular_component	ND No biological Data available more info

General protein information

Go to the top of the page Help

Preferred Names: putative ribosome-binding factor A, mitochondrial

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001089485.2 → NP_001082954.2 putative ribosome-binding factor A, mitochondrial

Status: VALIDATED

Source sequence(s)

CR391941

UniProtKB/TrEMBL

A4IGC4

Related

ENSDARP00000114038.1, ENSDART00000132445.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007127.7 Reference GRCz11 Primary Assembly

Range

25361515..25368048 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021466574.1 → XP_021322249.1 putative ribosome-binding factor A, mitochondrial isoform X1

UniProtKB/TrEMBL

A0A8M9PCU0, A4IGC4, F1QXS7

Conserved Domains (1) summary

pfam02033
Location:104 → 208

RBFA; Ribosome-binding factor A