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LOC100006777 protocadherin-10 [ Danio rerio (zebrafish) ]

Gene ID: 100006777, updated on 12-Sep-2024

Summary

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Gene symbol
LOC100006777
Gene description
protocadherin-10
See related
Ensembl:ENSDARG00000107353
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
pcdh10
Orthologs
all
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Genomic context

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See LOC100006777 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (21511599..21521014)
105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (21559361..21563648)

Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene F-box and WD repeat domain containing 11b Neighboring gene fibroblast growth factor 18b Neighboring gene protocadherin alpha-C2 Neighboring gene zgc:165539

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
protocadherin-10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007121.7 Reference GRCz11 Primary Assembly

    Range
    21511599..21521014
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021479329.2 → XP_021335004.1  protocadherin-10

    UniProtKB/TrEMBL
    A0A286YBK8, A0A8M9QCF6
    Related
    ENSDARP00000144566.1, ENSDART00000178395.2
    Conserved Domains (4) summary
    cd11304
    Location:243 → 342
    Cadherin_repeat; Cadherin tandem repeat domain
    pfam08266
    Location:26 → 108
    Cadherin_2; Cadherin-like
    pfam15974
    Location:884 → 950
    Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
    pfam16492
    Location:685 → 781
    Cadherin_C_2; Cadherin cytoplasmic C-terminal
Nucleotide Protein Strain
Heading Accession and Version

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