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arrdc1a arrestin domain containing 1a [ Danio rerio (zebrafish) ]

Gene ID: 100006005, updated on 9-Dec-2024

Summary

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Official Symbol
arrdc1aprovided by ZNC
Official Full Name
arrestin domain containing 1aprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030925-15
See related
Ensembl:ENSDARG00000068148 AllianceGenome:ZFIN:ZDB-GENE-030925-15
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
arrdc1; sb:cb786; zgc:92248; wu:fc25g09; wu:fi04h05; si:rp71-1o1.5
Summary
Predicted to enable ubiquitin protein ligase binding activity and ubiquitin-like ligase-substrate adaptor activity. Predicted to be involved in protein transport. Predicted to be active in cytoplasm. Is expressed in several structures, including ectoderm; mesoderm; presumptive ectoderm; pronephric duct; and sensory system. Orthologous to human ARRDC1 (arrestin domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See arrdc1a in Genome Data Viewer
Location:
chromosome: 5
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (29516843..29531948, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (28916690..28931795, complement)

Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, N type, alpha 1B subunit, a Neighboring gene euchromatic histone-lysine N-methyltransferase 1a Neighboring gene P2Y purinoceptor 4 Neighboring gene negative elongation factor complex member B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. On the origins of arrestin and rhodopsin. Alvarez CE. BMC Evol Biol, 2008 Jul 29. PMID 18664266, Free PMC Article
  2. Pre-gastrula expression of zebrafish extraembryonic genes. Hong SK, et al. BMC Dev Biol, 2010 Apr 27. PMID 20423468, Free PMC Article
  3. Characterization of retinoid-X receptor genes rxra, rxrba, rxrbb and rxrg during zebrafish development. Tallafuss A, et al. Gene Expr Patterns, 2006 Jun. PMID 16448862
  4. Genome-wide survey and developmental expression mapping of zebrafish SET domain-containing genes. Sun XJ, et al. PLoS One, 2008 Jan 30. PMID 18231586, Free PMC Article
  5. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article

See all (9) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC92248, MGC113850, MGC173793

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
arrestin domain-containing protein 1a
Names
arrestin domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001004561.1 → NP_001004561.1  arrestin domain-containing protein 1a

    See identical proteins and their annotated locations for NP_001004561.1

    Status: PROVISIONAL

    Source sequence(s)
    AL831768
    UniProtKB/TrEMBL
    A7YYD6, Q6ZM71
    Related
    ENSDARP00000089131.4, ENSDART00000098360.5
    Conserved Domains (2) summary
    pfam02752
    Location:162 → 283
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    cl22903
    Location:7 → 139
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007116.7 Reference GRCz11 Primary Assembly

    Range
    29516843..29531948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005171783.5 → XP_005171840.1  arrestin domain-containing protein 1a isoform X2

    UniProtKB/TrEMBL
    A0A8M2BJ09
    Conserved Domains (2) summary
    pfam02752
    Location:162 → 283
    Arrestin_C; Arrestin (or S-antigen), C-terminal domain
    cl22903
    Location:7 → 139
    Arrestin_N; Arrestin (or S-antigen), N-terminal domain

  2. XM_068221047.1 → XP_068077148.1  arrestin domain-containing protein 1a isoform X1

Nucleotide Protein Strain
Heading Accession and Version

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