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si:dkeyp-115e12.6 si:dkeyp-115e12.6 [ Danio rerio (zebrafish) ]

Gene ID: 100005596, updated on 4-Jan-2025

Summary

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Official Symbol
si:dkeyp-115e12.6provided by ZNC
Official Full Name
si:dkeyp-115e12.6provided by ZNC
Primary source
ZFIN:ZDB-GENE-141210-2
See related
Ensembl:ENSDARG00000090986 AllianceGenome:ZFIN:ZDB-GENE-141210-2
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary
Predicted to enable microtubule binding activity. Predicted to be located in chromosome, centromeric region. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See si:dkeyp-115e12.6 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (8638339..8697378)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (8332204..8391264)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene syntaxin 5A Neighboring gene zgc:162144 Neighboring gene serine/threonine-protein kinase pim-3-like Neighboring gene potassium channel, subfamily K, member 4a Neighboring gene uncharacterized LOC137487564

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables microtubule binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome, centromeric region IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
centromere protein F
Names
centromere protein F-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    8638339..8697378
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021481112.2 → XP_021336787.1  centromere protein F isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZH7
    Conserved Domains (3) summary
    pfam10481
    Location:1 → 271
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:1631 → 1677
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
    cl25732
    Location:252 → 986
    SMC_N; RecF/RecN/SMC N terminal domain

  2. XM_021481113.2 → XP_021336788.1  centromere protein F isoform X2

    UniProtKB/TrEMBL
    A0A0R4IN88, A0A8M9QBB8
    Related
    ENSDARP00000137794.1, ENSDART00000163240.2
    Conserved Domains (3) summary
    pfam10481
    Location:1 → 270
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:1630 → 1676
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
    cl25732
    Location:251 → 985
    SMC_N; RecF/RecN/SMC N terminal domain

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394892.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    249..56758
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001344567.9 → XP_001344603.4  centromere protein F isoform X1

    UniProtKB/TrEMBL
    A0A8M1PZT6
    Conserved Domains (4) summary
    pfam10481
    Location:1 → 271
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:1632 → 1678
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
    cl25732
    Location:252 → 986
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26309
    Location:1061 → 1312
    MscS_TM; Mechanosensitive ion channel inner membrane domain 1

  2. XM_021472747.2 → XP_021328422.1  centromere protein F isoform X2

    UniProtKB/TrEMBL
    A0A8M9PBJ1
    Conserved Domains (4) summary
    pfam10481
    Location:1 → 270
    CENP-F_N; Cenp-F N-terminal domain
    pfam10490
    Location:1631 → 1677
    CENP-F_C_Rb_bdg; Rb-binding domain of kinetochore protein Cenp-F/LEK1
    cl25732
    Location:251 → 985
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26309
    Location:1060 → 1311
    MscS_TM; Mechanosensitive ion channel inner membrane domain 1
Nucleotide Protein Strain
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