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etaa1b ETAA1 activator of ATR kinase b [ Danio rerio (zebrafish) ]

Gene ID: 100005357, updated on 4-Jan-2025

Summary

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Official Symbol
etaa1bprovided by ZNC
Official Full Name
ETAA1 activator of ATR kinase bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-081107-73
See related
Ensembl:ENSDARG00000078166 AllianceGenome:ZFIN:ZDB-GENE-081107-73
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
si:dkey-78p8.1; si:dkey-78p8.2
Summary
Orthologous to human ETAA1 (ETAA1 activator of ATR kinase). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See etaa1b in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (5245099..5257520, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (5118673..5128966, complement)

Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family G (WHITE), member 2c Neighboring gene solute carrier family 29 member 3 Neighboring gene uncharacterized LOC137487358 Neighboring gene uncharacterized LOC137487359

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome. Basu S, et al. Sci Rep, 2016 Sep 15. PMID 27628538, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
equilibrative nucleoside transporter 3; ewing's tumor-associated antigen 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007124.7 Reference GRCz11 Primary Assembly

    Range
    5245099..5257520 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021480714.2 → XP_021336389.1  ewing's tumor-associated antigen 1

    UniProtKB/TrEMBL
    A0A8M1Q7V8
    Related
    ENSDARP00000131929.1, ENSDART00000110610.4
    Conserved Domains (1) summary
    pfam15350
    Location:59 → 455
    ETAA1; Ewing's tumor-associated antigen 1 homolog

RNA

  1. XR_011005882.1 RNA Sequence

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394862.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    52694..65115 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001344402.9 → XP_001344438.6  ewing's tumor-associated antigen 1

    UniProtKB/TrEMBL
    A0A8M1Q7V8
    Conserved Domains (1) summary
    pfam15350
    Location:59 → 455
    ETAA1; Ewing's tumor-associated antigen 1 homolog

RNA

  1. XR_011009930.1 RNA Sequence

Nucleotide Protein
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