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si:ch73-31d8.2 si:ch73-31d8.2 [ Danio rerio (zebrafish) ]

Gene ID: 100003674, updated on 9-Dec-2024

Summary

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Official Symbol
si:ch73-31d8.2provided by ZNC
Official Full Name
si:ch73-31d8.2provided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8387
See related
Ensembl:ENSDARG00000097239 AllianceGenome:ZFIN:ZDB-GENE-030131-8387
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fb10g08; wu:fb10g08
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See si:ch73-31d8.2 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 16 NC_007127.7 (48753438..48756703)
105 previous assembly GRCz10 (GCF_000002035.5) 16 NC_007127.6 (48811529..48814685)

Chromosome 16 - NC_007127.7Genomic Context describing neighboring genes Neighboring gene transporter 1, ATP-binding cassette, sub-family B (MDR/TAP) Neighboring gene bromodomain containing 2b Neighboring gene raftlin Neighboring gene uncharacterized LOC137487985 Neighboring gene cysteine-rich venom protein natrin-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_170088.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CU694227
    Related
    ENSDART00000155148.2

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007127.7 Reference GRCz11 Primary Assembly

    Range
    48753438..48756703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.