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retreg1 reticulophagy regulator 1 [ Danio rerio (zebrafish) ]

Gene ID: 100003524, updated on 4-Jan-2025

Summary

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Official Symbol
retreg1provided by ZNC
Official Full Name
reticulophagy regulator 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-130221-1
See related
Ensembl:ENSDARG00000079059 AllianceGenome:ZFIN:ZDB-GENE-130221-1
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fam134b
Summary
Predicted to act upstream of or within reticulophagy. Predicted to be located in endoplasmic reticulum and membrane. Human ortholog(s) of this gene implicated in hereditary sensory and autonomic neuropathy type 2B. Orthologous to human RETREG1 (reticulophagy regulator 1). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See retreg1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (31780157..31800758, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (31797172..31817558, complement)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene RALY RNA binding protein like Neighboring gene actinodin2 Neighboring gene ring finger protein 182 Neighboring gene RAN binding protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Contrasted innate responses to two viruses in zebrafish: insights into the ancestral repertoire of vertebrate IFN-stimulated genes. Briolat V, et al. J Immunol, 2014 May 1. PMID 24683187
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
acts_upstream_of_or_within reticulophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
reticulophagy regulator 1
Names
family with sequence similarity 134, member B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    31780157..31800758 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001343026.7 → XP_001343062.1  reticulophagy regulator 1

    UniProtKB/TrEMBL
    A0A8M1Q245
    Related
    ENSDARP00000099481.3, ENSDART00000112763.4
    Conserved Domains (2) summary
    pfam02453
    Location:65 → 212
    Reticulon; Reticulon
    cl01834
    Location:366 → 435
    PSK_trans_fac; Rv0623-like transcription factor
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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