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fam53c family with sequence similarity 53 member C [ Danio rerio (zebrafish) ]

Gene ID: 100002393, updated on 9-Dec-2024

Summary

Official Symbol
fam53cprovided by ZNC
Official Full Name
family with sequence similarity 53 member Cprovided by ZNC
Primary source
ZFIN:ZDB-GENE-091027-2
See related
Ensembl:ENSDARG00000045127 AllianceGenome:ZFIN:ZDB-GENE-091027-2
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:175066
Summary
Predicted to be involved in protein import into nucleus. Predicted to be active in nucleus. Orthologous to human FAM53C (family with sequence similarity 53 member C). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See fam53c in Genome Data Viewer
Location:
chromosome: 21
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 21 NC_007132.7 (30260143..30284629, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 21 NC_007132.6 (30223450..30248925, complement)

Chromosome 21 - NC_007132.7Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene bromodomain containing 8a Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 18 Neighboring gene stem-loop binding protein 2 Neighboring gene zinc finger, matrin-type 2

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in protein import into nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001111239.2NP_001104709.1  protein FAM53C

    See identical proteins and their annotated locations for NP_001104709.1

    Status: VALIDATED

    Source sequence(s)
    BX510945, CU462984
    UniProtKB/TrEMBL
    A9JTF4, B7ZVE6
    Related
    ENSDARP00000066362.5, ENSDART00000066363.6
    Conserved Domains (1) summary
    pfam15242
    Location:72284
    FAM53; Family of FAM53

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007132.7 Reference GRCz11 Primary Assembly

    Range
    30260143..30284629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)