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taf7 TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor [ Danio rerio (zebrafish) ]

Gene ID: 100002261, updated on 9-Dec-2024

Summary

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Official Symbol
taf7provided by ZNC
Official Full Name
TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factorprovided by ZNC
Primary source
ZFIN:ZDB-GENE-020419-18
See related
Ensembl:ENSDARG00000019572 AllianceGenome:ZFIN:ZDB-GENE-020419-18
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
CHUNP6888
Summary
Predicted to contribute to RNA polymerase II general transcription initiation factor activity. Predicted to be involved in RNA polymerase II preinitiation complex assembly. Predicted to act upstream of or within transcription initiation at RNA polymerase II promoter. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIID complex. Orthologous to human TAF7 (TATA-box binding protein associated factor 7). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See taf7 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (40852504..40874102)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (40485250..40506848)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene E74-like ETS transcription factor 1 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene uncharacterized LOC100534741 Neighboring gene dystrophin related protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Quantitative mass spectrometry of TATA binding protein-containing complexes and subunit phosphorylations during the cell cycle. Pijnappel WP, et al. Proteome Sci, 2009 Dec 24. PMID 20034391, Free PMC Article
  2. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Golling G, et al. Nat Genet, 2002 Jun. PMID 12006978
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Clone Names

  • MGC86629, MGC174760

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
contributes_to RNA polymerase II general transcription initiation factor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in RNA polymerase II preinitiation complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  
part_of transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription factor TFIID complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
transcription initiation factor TFIID subunit 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_173260.1 → NP_775367.1  transcription initiation factor TFIID subunit 7

    See identical proteins and their annotated locations for NP_775367.1

    Status: PROVISIONAL

    Source sequence(s)
    AF506232
    UniProtKB/TrEMBL
    A8WGM5, F6P0Q4, Q8JHG4
    Related
    ENSDARP00000133252.1, ENSDART00000166065.3
    Conserved Domains (2) summary
    COG5414
    Location:15 → 349
    Taf7; TATA-binding protein-associated factor Taf7, part of the TFIID transcription initiation complex [Transcription]
    pfam04658
    Location:22 → 186
    TAFII55_N; TAFII55 protein conserved region

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    40852504..40874102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005173300.5 → XP_005173357.1  transcription initiation factor TFIID subunit 7 isoform X1

    See identical proteins and their annotated locations for XP_005173357.1

    UniProtKB/TrEMBL
    A8WGM5, F6P0Q4, Q8JHG4
    Related
    ENSDARP00000108885.1, ENSDART00000128588.4
    Conserved Domains (2) summary
    COG5414
    Location:15 → 349
    Taf7; TATA-binding protein-associated factor Taf7, part of the TFIID transcription initiation complex [Transcription]
    pfam04658
    Location:22 → 186
    TAFII55_N; TAFII55 protein conserved region
Nucleotide Protein Strain
Heading Accession and Version

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