U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

stxbp6l syntaxin binding protein 6 (amisyn), like [ Danio rerio (zebrafish) ]

Gene ID: 100002110, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
stxbp6lprovided by ZNC
Official Full Name
syntaxin binding protein 6 (amisyn), likeprovided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-16
See related
Ensembl:ENSDARG00000028354 AllianceGenome:ZFIN:ZDB-GENE-040724-16
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:110123; si:dkey-29m11.7; si:dkey-63j12.1
Summary
Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in Golgi to plasma membrane transport and exocytosis. Predicted to be part of exocyst. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See stxbp6l in Genome Data Viewer
Location:
chromosome: 20
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9828967..9848293)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9839927..9861053)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene DDHD domain containing 1b Neighboring gene uncharacterized LOC137488616 Neighboring gene gap junction protein delta 2b Neighboring gene actin, alpha, cardiac muscle 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Molecular Toxicity of Metal Oxide Nanoparticles in Danio rerio. Hou J, et al. Environ Sci Technol, 2018 Jul 17. PMID 29944347
  2. Identification of differentially expressed genes in the zebrafish hypothalamic-pituitary axis. Toro S, et al. Gene Expr Patterns, 2009 Apr. PMID 19166982, Free PMC Article
  3. Rab32 and Rab38 genes in chordate pigmentation: an evolutionary perspective. Coppola U, et al. BMC Evol Biol, 2016 Jan 27. PMID 26818140, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Clone Names

  • MGC110123

General protein information

Go to the top of the page Help
Preferred Names
syntaxin binding protein 6 (amisyn), like
Names
syntaxin binding protein 6-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020738.2 → NP_001018574.2  syntaxin binding protein 6 (amisyn), like

    See identical proteins and their annotated locations for NP_001018574.2

    Status: PROVISIONAL

    Source sequence(s)
    AL954679
    UniProtKB/TrEMBL
    A0A8M1N6F3, E7FEI5, Q5VSD0
    Related
    ENSDARP00000075137.5, ENSDART00000080691.6
    Conserved Domains (2) summary
    cd14681
    Location:2 → 130
    PH-STXBP6; PH-like domain of Syntaxin binding protein 6
    cl22856
    Location:227 → 276
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    9828967..9848293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021468334.2 → XP_021324009.1  syntaxin binding protein 6 (amisyn), like isoform X1

    UniProtKB/TrEMBL
    A0A0R4IU85, A0A8M9PH32
    Related
    ENSDARP00000138234.1, ENSDART00000160480.3
    Conserved Domains (2) summary
    cd14681
    Location:2 → 130
    PH-STXBP6; PH-like domain of Syntaxin binding protein 6
    cl22856
    Location:228 → 277
    SNARE; SNARE motif

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018395063.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    200714..214739
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395343.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    95061..114387
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools