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zgc:162707 zgc:162707 [ Danio rerio (zebrafish) ]

Gene ID: 100002095, updated on 9-Dec-2024

Summary

Official Symbol
zgc:162707provided by ZNC
Official Full Name
zgc:162707provided by ZNC
Primary source
ZFIN:ZDB-GENE-070424-37
See related
Ensembl:ENSDARG00000061664 AllianceGenome:ZFIN:ZDB-GENE-070424-37
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
c3orf70b
Summary
Involved in circadian behavior and nervous system development. Orthologous to human C3orf70 (chromosome 3 open reading frame 70). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

See zgc:162707 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 9 NC_007120.7 (12405118..12424794, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 9 NC_007120.6 (12433915..12453591, complement)

Chromosome 9 - NC_007120.7Genomic Context describing neighboring genes Neighboring gene chromobox protein homolog 5-like Neighboring gene zinc finger protein 804A Neighboring gene nucleoporin 35 Neighboring gene enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase Neighboring gene transmembrane protein 41aa

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

General gene information

Markers

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within circadian behavior IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in circadian behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in nervous system development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within nervous system development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within nervous system development IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in nervous system development IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0524 protein C3orf70 homolog B
Names
DKEYP-30D5.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001089454.1NP_001082923.1  UPF0524 protein C3orf70 homolog B

    See identical proteins and their annotated locations for NP_001082923.1

    Status: PROVISIONAL

    Source sequence(s)
    BC134060
    UniProtKB/Swiss-Prot
    A3KNX6
    Related
    ENSDARP00000082632.2, ENSDART00000088199.4
    Conserved Domains (1) summary
    pfam15823
    Location:11249
    UPF0524; UPF0524 of C3orf70

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007120.7 Reference GRCz11 Primary Assembly

    Range
    12405118..12424794 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009304502.4XP_009302777.1  UPF0524 protein C3orf70 homolog B isoform X1

    See identical proteins and their annotated locations for XP_009302777.1

    UniProtKB/Swiss-Prot
    A3KNX6, A9C3V9, A9C3W0
    Conserved Domains (1) summary
    pfam15823
    Location:11249
    UPF0524; UPF0524 of C3orf70