si:ch211-127m7.2 si:ch211-127m7.2 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:ch211-127m7.2provided by ZNC
Official Full Name: si:ch211-127m7.2provided by ZNC
Primary source: ZFIN:ZDB-GENE-141212-148
See related: Ensembl:ENSDARG00000103367 AllianceGenome:ZFIN:ZDB-GENE-141212-148
Gene type: protein coding
RefSeq status: MODEL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to act upstream of or within negative regulation of double-strand break repair via nonhomologous end joining. Orthologous to human CYREN (cell cycle regulator of NHEJ). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs: all
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Genomic context

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Location:: chromosome: 25

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	25	NC_007136.7 (20729674..20730808, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	25	NC_007136.6 (20631666..20633301, complement)

Chromosome 25 - NC_007136.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Markers

fc89a05.y1 (e-PCR)
- UniSTS:194750

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within negative regulation of double-strand break repair via nonhomologous end joining	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cell cycle regulator of non-homologous end joining

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007136.7 Reference GRCz11 Primary Assembly

Range

20729674..20730808 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_001341756.8 → XP_001341792.1 cell cycle regulator of non-homologous end joining

UniProtKB/TrEMBL

A0A0R4IQP0, A0A8M1PSK5

Related

ENSDARP00000138146.1, ENSDART00000172170.3

Conserved Domains (1) summary

pfam15325
Location:42 → 155

MRI; Modulator of retrovirus infection

Reference GRCz11 ALT_DRER_TU_1

Genomic

NW_018395199.1 Reference GRCz11 ALT_DRER_TU_1

Range

27411..28551 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021473859.2 → XP_021329534.1 cell cycle regulator of non-homologous end joining

UniProtKB/TrEMBL

A0A8M9PXE1

Conserved Domains (1) summary

pfam15325
Location:42 → 155

MRI; Modulator of retrovirus infection