txid574521[Organism] - GEO DataSets

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Select item 2000866401.

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic Escherichia coli

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Escherichia coli HS; Escherichia coli 102651; Escherichia coli ETEC H10407; Escherichia coli O127:H6 str. E2348/69; Escherichia coli 102712; Escherichia coli 402290; Escherichia coli 401140

Type:: Expression profiling by high throughput sequencing

7 related Platforms
52 Samples

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Series

Accession:: GSE86640

ID:: 200086640

PubMed Full text in PMC Similar studies

Select item 2000866332.

Comparative genomics and transcriptomics of Escherichia coli isolates carrying virulence factors of both enteropathogenic and enterotoxigenic Escherichia coli E2348/69

(Submitter supplied) Global transcriptional analysis of EPEC/ETEC hybrid isolates.

Organism:: Escherichia coli O127:H6 str. E2348/69; Escherichia coli HS

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL22414 GPL20262
9 Samples

Download data: TXT

Series

Accession:: GSE86633

ID:: 200086633

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000738853.

Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages

(Submitter supplied) Global transcriptional analysis of eleven EPEC strains, including the most frequently studied strains used in laboratory studies investigating EPEC virulence mechanisms.

Organism:: Escherichia coli; Escherichia coli O127:H6 str. E2348/69; Escherichia coli 103385; Escherichia coli 300059; Escherichia coli 402290; Escherichia coli 401140; Escherichia coli B171; Escherichia coli 100329; Escherichia coli 302053; Escherichia coli E110019; Escherichia coli C581_05

Type:: Expression profiling by high throughput sequencing

11 related Platforms
44 Samples

Download data: TXT

Series

Accession:: GSE73885

ID:: 200073885

SRA Run Selector

Select item 2000910014.

PerC manipulates metabolism and surface antigens in enteropathogenic Escherichia coli

(Submitter supplied) Purpose: This study aimed to identify the genes regulated by plasmid-encoded regulator C (PerC). Whole transcriptomes of WT typical enteropathogenic E. coli (tEPEC) strains E2348/69 and coisogenic null-perC mutant JPEP22 were analyzed to identify and quantify differentially expressed genes. Methods: RNA was isolated from the WT and null-perC mutant strains and RNA integrity (RIN) was determined to be 10 out of possible 10 for all samples by Aligent Bioanalyzer. more...

Organism:: Escherichia coli O127:H6 str. E2348/69; Escherichia coli

Type:: Expression profiling by high throughput sequencing

Platforms:: GPL14548 GPL20262
6 Samples

Download data: BEDGRAPH, TXT, XLS

Series

Accession:: GSE91001

ID:: 200091001

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000693755.

Comparative genomics provides insight into the diversity of the attaching and effacing Escherichia coli (AEEC) virulence plasmids

(Submitter supplied) Global transcriptional analysis of the EPEC prototype strain E2348/69 and its plasmid mutants containing a deletion of perABC, or missing the entire EAF plasmid (strain JPN15).

Organism:: Escherichia coli O127:H6 str. E2348/69

Type:: Expression profiling by high throughput sequencing

Platform:: GPL20262
12 Samples

Download data: TXT

Series

Accession:: GSE69375

ID:: 200069375

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 2000388766.

Ler regulation in EPEC

(Submitter supplied) Transcriptional profiling of wt and ler- EPEC and O157 E. coli strains at mid log and early stationary growth phases

Organism:: Escherichia coli O157:H7 str. EDL933; Escherichia coli O127:H6 str. E2348/69

Type:: Expression profiling by array

Platforms:: GPL15603 GPL15602
16 Samples

Download data: GPR, TXT

Series

Accession:: GSE38876

ID:: 200038876

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000396677.

Genomic diversity of Escherichia isolates from diverse habitats

(Submitter supplied) Comparative genomic hybridization between Escherichia coli strains to determine core and pan genome content of clinical and environmental isolates

Organism:: Escherichia coli O157:H7 str. Sakai; Escherichia albertii TW07627; Escherichia sp. TW11930; Escherichia sp. TW14264; Escherichia sp. TW14266; Escherichia coli; Escherichia coli O157:H7 str. EDL933; Escherichia albertii; Escherichia sp. TW09254; Escherichia sp. TW09266; Escherichia sp. TW09276; Escherichia sp. TW09308; Escherichia sp. TW14263; Shigella flexneri 2a str. 2457T; Escherichia coli CFT073; Escherichia coli 042; Escherichia coli str. K-12 substr. MG1655; Escherichia sp. TW09231; Escherichia sp. TW11588; Escherichia sp. TW11966; Escherichia sp. TW14265; Escherichia sp. TW14267; Escherichia sp. Z205; Escherichia coli O127:H6 str. E2348/69; Escherichia sp. RL325/96; Escherichia sp. TW14182

Type:: Genome variation profiling by array

Platform:: GPL15851
50 Samples

Download data: GPR

Series

Accession:: GSE39667

ID:: 200039667

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 1000202628.

Illumina HiSeq 2000 (Escherichia coli O127:H6 str. E2348/69)

Organism:: Escherichia coli O127:H6 str. E2348/69

5 Series
27 Samples

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Platform

Accession:: GPL20262

ID:: 100020262

Select item 1000156029.

Agilent Escherichia coli 0127:H6 E2348/69

(Submitter supplied) in-situ synthesized 60mer 8x15k oligonucleotide arrays. Multiple probes per gene designed by OGT were screened by UBEC using RNA and genomic DNA hybridizations. Optimal probe per gene was selected and arrays were synthesized by Agilent.